Showing posts with label Jared Diamond. Show all posts
Showing posts with label Jared Diamond. Show all posts

Thursday, March 23, 2006

Do You Feel Lucky, Pan sapiens?


There are a lot of reasons to be baffled by the renewed attacks on the theory of evolution(1), but I'm particularly bemused by the denialists' contention that the theory is a dangerous dogma. It's true that there's no shortage of dull-witted biologists who can be too stubborn in their pronouncements, as unwilling to consider a dissenting perspective as the loudest denialist(2), but any scientist worth her salt - or, for that matter, any informed, reasonable individual - realizes that the theory of evolution is, itself, evolving. Sure, some scientists can be dogmatic, but the theory in question is not a dogma. It is adaptable.

When most of us hear the word, evolution, crude caricatures of chimpanzees, Neanderthals, and walking fish-reptiles come to mind. Sometimes, we may even think of diagrammed cell division or an eukaryote propelling itself by means of rudimentary flagella. Yet rarely, if ever, do we consider change at the molecular level. Biophysicists Harold Morowitz, of George Mason University, and Eric Smith, of the Santa Fe Institute, do exactly that, suggesting that a "central set of chemical reactions has been in place since life's earliest moments about four billion years ago." Journalist Joel Achenbach explains the Morowitz/Smith hypothesis in a recent National Geographic piece, "The Origin of Life...Through Chemistry."
"These reactions involve just 11 small carbon molecules, such as citric and acetic acids, very ordinary stuff that would have been abundant on the young Earth. Those 11 molecules could have played a role in other chemical reactions that led to the development of such biomolecules as amino acids, lipids, sugars, and eventually some kind of genetic molecule such as RNA."
What makes the hypothesis so fascinating, though, is the suggestion that survival of the fittest or, more accurately, natural selection, occurs at the molecular level. Acenbach clarifies: "Some types of molecular chains outcompeted other molecular chains for the planet's resources, and gradually they led to the type of molecules that life depends upon - all this before the first living thing oozed forth." Wow! It seems obvious, really. Of course molecules compete in the same way genes do.

Unmentioned in the Geographic article is the divide between Millerites, evolutionary biologists who stand by Stanley Miller's mid-twentieth century hypothesis that life began at surface level, when electricity, atmospheric gases, and water interacted in such a way as to form the oft-mentioned biotic soup, and ventists, the scientists who feel such a soup was more likely arrived at on the ocean's floor, a by-product of interactions involving pressure and heat near hydrothermal vents. (I prefer to think of the two perspectives as the Frankenstein approach (electricity) and the oven hypothesis (hydrothermal) and, although I remain uncertain of which I "support," when the two camps duke it out the Frankenstein approach always seems to be forced back against the ropes.) Morowitz and Smith are ventists. Will their molecular metabolism hypothesis, viable both on the surface and under the sea, come under fire from Millerites because they are "the enemy"?

Such language - "duke it out," "the enemy" - is hyperbolic, but most folks would be shocked by how nasty the debates in the halls of evolutionary biology can become. Whatever impression the more extreme denialists seek to convey (e.g., Darwin was a blasphemer who today inspires countless secularists, marching in lockstep, to carry on his unholy work), the theory of evolution is anything but settled. Darwin's theories provide a spring board, an introduction, but are not fast. As with most revolutionary science, Darwin's ideas raise a host of questions.

One of these questions, in particular, has plagued biologists ever since Darwin's theory was first published. Commonly referred to as the "paradox of evolution," it asks, how can we reconcile evolutionary variation - all the shapes, colors, sizes, etc. - with the limited number of structures and systems all species share? The two readily observable realities seem contradictory: unlimited diversity produced by a limited system. Marc Kirschner, chair of the Systems Biology Department at Harvard Medical School, recently proposed a novel answer, facilitated variation. I turn to Robin Marantz Henig's article, "Resolving Evolution's Greatest Paradox," in the March/April 2006 issue of New York Academy of Sciences Update.
"Kirschner used an analogy borrowed from the kindergarten classroom to explain how his and Gerhart's theory differs from evolutionary theory up to this point. Traditionally, he said, biologists have compared life to a lump of modeling clay, 'incredibly plastic, and able—due to the accrual of many small changes—to go in any direction.' But this is the wrong metaphor, he said. In truth, life is more like a bunch of Lego blocks. As with Legos, the basic building blocks of biology are rigid and quite similar to one another, but 'there is a large variety of structures that can be assembled from similar parts.'

Another way of looking at it, Kirschner said, is to try to imagine trying to get a monkey to write the word 'MONKEY.' You could do so by giving the monkey a pen and paper, but that would never work—all you'd get would be 'random lines and scratches.' But if you gave him a typewriter, then you might be getting somewhere. It would take a very long time (Kirschner calculated about ten years, typing at the rate of one keystroke per second round-the-clock), but the monkey would eventually produce all six letters in the right order, because the typewriter restricts the results of his physical actions—always letters instead of scribble-scrabble. 'Letters have at least a chance to be useful,' Kirschner said. 'Most pen scratches do not.'

If, instead of a typewriter, the monkey was pounding on a computer keyboard programmed with an automatic spelling corrector, the time it would take for him to type out the word 'MONKEY' would be reduced dramatically, from ten years to probably less than a single day. 'More constraint equals more useful outcomes,' Kirschner said."
OK. That's clear, but how can the spell checker analogy account for so much complexity and variation?
"Complexity in multicellular organisms—changes and refinements in beak shape, pigmentation, jaw structure, limb formation—can be explained, he said, by forces involved in 'changing the time and extent of a process rather than creating a new process.'...[This] helps account for the surprising fact that the human genome isn't much bigger than the genome of a frog or a fruit fly. The vast differences among these organisms are accounted for not by number of genes, he said, but by how the genes are expressed...In other words, the gene itself doesn't have to be different; what changes is the timing or location of the gene's expression."
Beautiful! One need look no further than the gestation of a human embryo to get a sense of how facilitated variation works, each step recalled and repeated, generation after generation, the species' genome receiving new information all the while. The same "program" is "running" inside frog eggs or the squirrel's womb.

Still, it's important to note that facilitated variation is but a piece of the ever-changing puzzle, no more or less important than punctuated equilibrium or the notion of spandrels. Moreover, though a lovely marriage of genetics and natural selection, Kirschner's theory is less applicable when considering a restricted time line.

"Global Warming Fuels Speedy Evolution," a piece by Larrry O'Hanlon (Discovery News), provides readers with a number of recent, documented cases of dramatic changes in animal phylogeny. Within the past seven years, the cane toad (Bufo marinus) population in Australia - an introduced, destructive species - has evolved longer legs, an adaptation that has made the species considerably more mobile, enabling them to more quickly expand away from the introduction point. Longer legs equals more ground covered which, in turn, means access to virgin territory and plentiful food. In short, further colonization. Not surprisingly, some native Australian snake species viewed the new arrivals as prey. After swallowing the amphibians, however, these reptiles would ingest the toad's toxin and - pardon the pun - croak. Amazingly, in the same seven-year window, these snake species have, via natural selection, developed smaller jaws, thereby preventing them from eating the toads and ingesting the toxin. All this change in seven years and across several unrelated species!

Invasive species aren't the only reason for accelerated, or rapid evolution, as it is officially called. Global warming (better termed climate change) is a prime mover, too.
"Research on toads, frogs, salamanders, fish, lizards, squirrels, and plants are all showing evidence that some species are attempting to adapt to new conditions in a time frame of decades, not eons, say biologists. What's more, one of the biggest reasons for all this evolution right now may be that human-induced changes to climate and landscapes give species few other options....The first known case of a mammal responding genetically to warmer climate warming is the red squirrel of the Yukon Territory. Canadian scientists have discovered that red squirrels are giving birth about 18 days earlier than their great-grandmothers. It's the early squirrel that gets the nut, after all: natural selection in action. 'Climate change is going to be a massive agent of evolution,' said ecologist and rapid evolution researcher David Skelly of Yale University."
Rapid evolution provides more evidence for the punctuated equilibrium hypothesis, suggesting that, when need be, species have the ability to adapt much more quickly than paleontologists, geneticists, and evolutionary biologists originally believed possible. The gaps in the fossil record, so often highlighted by denialists as proof of evil-ution's failings, are easily accounted for when we observe, in the space of just one decade, significant phylogenetic changes within a given population.

All of these observations and new hypotheses are very exciting to me, but I realize a portion of the folks reading Hungry Hyaena, maybe even the majority, find this round-up rather esoteric. I thought it only sensible, then, to wrap up by bringing evolution closer to home or, in this case, closer to man. Biologist Soojin Yi (Georgia Institute of Technology, Atlanta) recently confirmed that both species of chimpanzee (Pan troglodytes and Pan paniscus) are more closely related to humans than previously assumed. In fact, as I've argued often, it looks as though the taxonomy will have to be changed. Homo sapiens will no longer be alone in the genus; Homo troglodytes and Homo paniscus will soon be joining our private party!

I hope this announcement will provide a reality check for our unfathomable human hubris, but, as incredibly happy as I am about it, I'm not altogether satisfied about where it will lead. As I see it, humans should move genus, not chimpanzees. Our species should be dubbed Pan sapiens. In other words, we should willingly discard our crown and step down to join the great unwashed, honest at last when regarding our reflection. I'm not alone in feeling this way. Andrew Rambaut, an evolutionary biologist at Oxford University, says, "It seems a bit human-centric to want to put chimps into the 'Homo' genus and not reclassify humans as 'Pan.'" Jared Diamond, the acclaimed author of Guns, Germs, and Steel and, more recently, Collapse, wrote an excellent, lesser known book in 1991, titled, The Third Chimpanzee, in which, among innumerable salient points, he suggested we do away with the arbitrary Homo delineation. After all, every ape relies on the same damned spell checker.

(1) Some folks refer to intelligent design as "the fourth wave" of resistance. The first wave of opposition dates back to the 1860s, when the theory was nascent and controversial. The second wave, during the 1920s, culminated with the Scopes Trial. Then, in 1987, the Supreme Court ruled against mandatory teaching of creation science - Edwards v. Aguillard - effectively putting an end to the third wave.

(2) Reading "Evolution In Action" (Sid Perkins, Science News, Feb. 25, 2006), I was struck by the us-versus-them tone prevalent throughout the article. The reactionary posturing of some scientists - and, in this case, a science journalist - can take on a disturbing tone: "From 2001 through 2003, anti-evolution activity was reported in 40 states." Anti-evolution activity? Reported? The witch-hunt has begun!

Photo credit: Ripped from brainfuel.tv

Monday, June 20, 2005

The Book Meme Got Me

I was "infected" with this meme (via Vitriolic Monkey) some time ago. It lay dormant, thoughtfully waiting for me to wrestle the more serious mystery infection into something resembling submission. Anyway, now that my brain seems to be back up to snuff - at least, as up to snuff as it can get - I figure I'll answer these.

1. Total number of books I've owned.
This is a silly question, especially considering those school book sales they used to host in the early grades. Man, I would raid those places! Of course, I focused on Mad Libs but books were also purchased, much to my mother's relief.

Currently I have just under 300 books in my Queens apartment, but many more are at my parents' house in Virginia; unfortunately, small apartments don't allow for a proper library.

I'm something of a bibliophile. I love to - no, must - smell books and run my fingers down the different papers or up the binding; it's a perversion, really, but one that I'm quite comfortable with. As for how many books I have ever owned...I've no idea.

2. Last book I bought.
A three-way purchase:
Foop!, by Chris Genoa, a debut novel by a college buddy of mine. I'm halfway through and enjoying it.

Shoveling Fuel For A Runaway Train: Errant Economists, Shameful Spenders, And A Plan To Stop Them All, by Brian Czech, a conservation biologist and founder of The Center for the Advancement of the Steady State Economy.

XXX: 30 Porn-Star Portraits, by Timothy Greenfield-Sanders, the acclaimed photographer; this is more of a coffee table art book than a good read.

3. Last book I read.
I'm currently reading nine books and attempting to keep up with my many magazine subscriptions so things can get confusing. The two books I finished most recently are:

Tigers & Ice: Reflections on Nature and Life, by Edward Hoagland, one of the best American essayists of the twentieth century and almost certainly the best one working today.

Living Wild & Domestic: The Education of a Hunter-Gardener, by Robert Kimber; Quite simply, one of the best books I have ever read dealing with the philosophical hand wringing of hunting, fishing, and agriculture and how these relate to conservation and, more importantly, each of our lives.

4. Five books that mean a lot to me.
I will list four books and one category.

Childhood favorites that I still cherish; The Chronicles of Narnia, by C.S. Lewis, Watership Down, by Richard Adams, The Hobbit and The Lord of the Rings, by J.R.R. Tolkien, The Just So Stories, by Rudyard Kipling.

On Human Nature, by E.O. Wilson

Consilience: The Unity of Knowledge, by E.O. Wilson

The Third Chimpanzee: The Evolution and Future of the Human Animal, by Jared Diamond

Speak, Memory, by Vladimir Nabakov

There are so many also-rans (not in the pejorative sense) that it becomes hard to narrow it down to five. Also, excepting the childhood reads, I have not included any fiction. I still enjoy reading fiction and some of my favorite books are novels, but my recollection of such writing is fleeting; my "artsy side" seems more attuned to visual art and film.

5. People who I'll infect with this meme.
I think all the bloggers I know have either already been "infected" or host sites that are focused on things other than book lists. I don't want to end the meme, however, so I'll pass this along to the following sites, but with the understanding that they don't HAVE to do it, especially you, Chris, since it might seem very out of place at Organic Matter.
Get Up Stand Up
Dirt and Soundwaves
Organic Matter

Friday, April 08, 2005

Evolution and Radical Longevity

On the subway ride to work this morning, I finished a chapter of Jared Diamond’s The Third Chimpanzee, entitled “Why Do We Grow Old and Die?” In it, Diamond discusses how natural selection has played the prominent role in increasing our species longevity and also addresses why all systems, bodies or otherwise, break down over time. He focuses on the concept of “optimization,” that is, Nature’s tendency to maximize survival and reproductive success of the overall design, rather than optimizing particular elements.

To explain his point, he cites the Royal Navy’s decision, in World War I, to build a better warship by “keep[ing] the weight of the big guns nearly constant, and greatly increase[ing] the weight of the engines while still maintaining a total weight around 28,000 tons.” The result was the heavily armored, swift battle cruiser, a vessel which could outmaneuver the more clunky battleships. These battle cruisers were heavily publicized and celebrated as marvels of engineering. The ships, unfortunately, didn’t fare well in combat. To maintain the preferred weight, the designers had skimped on hull armor and anti-aircraft defense, making them easy to sink.

Diamond writes,
“In short, engineers can’t tinker with single parts in isolation from the rest of the machine, because each part costs money, space, and weight that might have gone into something else. Engineers instead have to ask what combination of parts will optimize a machine’s effectiveness. By the same reasoning, evolution can’t tinker with single traits in isolation from the rest of the animal, because every structure, enzyme, or piece of DNA consumes energy and space that might have gone into something else. Instead, natural selection favors that combination of traits that maximizes the animal’s reproductive output.”
And so it is with menopause, for example. Female hunter-gatherers were at great risk of death during childbirth. With each proceeding child, the risk increased. Those females who stopped being able to procreate later in life were therefore more likely to survive and mother the offspring already born to them, increasing the chances that their genes would be passed on. Menopause, Diamond contends, was a genetic mutation favored by natural selection, as is any advantageous mutation that increases our life spans without detriment to the rest of the corporeal vessel.

Because the body is the sum of its parts, then,
“there should not be just one, or even a few, dominant physiological mechanisms of aging. Instead, natural selection should act to match rates of aging in all physiological systems, with the result that aging involves innumerable simultaneous changes.”
In other words, at some point, “everything collapses at once” and we die. For this reason, Diamond argues that we can not find the fountain of youth by seeking to remedy one critical flaw in our design. The many tried methods of the previous century, be they injections with bee or snake venom, consumption of particular vitamins or foodstuffs, or any number of other outlandish “cures for aging,” are all pointless.

But what to make, then, of Aubrey de Grey, the Cambridge University geneticist (who can be immediately recognized by his impressive beard) and his claims that people who are now 60 years of age could live to be 1,000. Curiously, his arguments don’t disagree with Diamond’s assessment of the aging process. In fact, in this interview, his own discussion parallels arguments Diamond makes, particularly in regards to predation pressure dictating the opportunity cost of biological repair and, in turn, average life span of species. As Diamond explains, birds and turtles tend to live longer than similarly sized land mammals or shell-less reptiles because they have better escape ability (flight) or defense (shells) and therefore a better chance of surviving predation attempts. Because they are less vulnerable to attack and predation, then, the body can expend more energy on physiological repair. Diamond writes,
“If you’re likely to be eaten by a lion tomorrow, there’s no point in paying the dentist to start expensive orthodontic work on your teeth today. You’d do better to let your teeth rot and start having babies immediately. But if an animal’s risk of death from irreparable accidents is low, then there is potential payoff, in the form of increased life span, from putting energy into expensive repair mechanisms that retard aging.”
De Grey evidently agrees with Diamond regarding the evolution of aging, and his “cure for aging” doesn’t consist of “fixing” one broken mechanism; he suggests that a more holistic approach is necessary and, today, is feasible.

Despite making rational, informed arguments, though, I think De Grey is overly optimistic, especially with regard to the timeframe for such “improvements.” Yet the questions raised by the prospect of radical longevity should not be dismissed. It seems increasingly likely that our human lifespan will be lengthened, even if the marked jumps predicted by De Grey may come in the more distant future and involve less of a life span extension. Jamais Cascio, at WorldChanging, discusses such concerns in brief in his post on Charles C. Mann’s Atlantic Monthly article, “The Coming Death Shortage.” I have not read Mann’s piece, but Cascio responds to some of Mann’s concerns, most notably increasing social and economic inequality. Cascio disagrees with Mann’s “general disapproval of the idea of radical longevity,” pointing out that “too often we give insufficient credit to the resiliency of human culture.” While this last statement is certainly accurate, I believe there is much reason to be concerned, particularly when considering population and environmental impact, though I stop short of bemoaning the concept/possibility of radical longevity altogether.

I think the comment by Mr. Farlops, at the bottom of the Cascio piece, puts it well.
“Birth control and lack of sustainability are also problems now. Longevity only magnifies their importance. Perhaps some passive yet progressively minded people, faced with long life in a declining world, might be forced to do something about it. But we really can't count on that either. [...] I guess my opinion could summarized as let's deal with sustainability, birth control [...] now and not worry about stuff like rejuvenation and longevity.”
Indeed.